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fix(deps): raise gitpython and pypdf floors for new advisories

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gitpython 3.1.57 carries GHSA-9rj7-rf2p-w77r, GHSA-4gmw-gg2m-w46p,
GHSA-hh9p-6wh2-4mfc, GHSA-wvpp-8hx9-p66j and GHSA-jm78-9fvv-mhgr: further
unguarded git option forwarding in Repo.init, read-tree and git-config,
plus arbitrary file read via --pathspec-from-file. Fixed in 3.1.58.

pypdf 6.14.2 carries GHSA-fwg2-594c-jp42 and GHSA-fp3f-mc75-235c,
unbounded runtime and memory on large content and /ToUnicode streams.
Fixed in 6.15.0.

Both floors were already pinned, so only the versions move. Their
exclude-newer-package cutoffs had to move with them - 3.1.58 landed
2026-08-04 and 6.15.0 on 2026-08-06, both past the existing dates, so the
resolver could not have seen either release.

Co-Authored-By: Claude Opus 5 (1M context) <noreply@anthropic.com>
This commit is contained in:
Joao Moura
2026-08-07 15:44:58 -07:00
parent 59c932cd68
commit 75da3625fc
2 changed files with 68 additions and 61 deletions
Download Patch File Download Diff File Expand all files Collapse all files

15
pyproject.toml
View File

@@ -172,7 +172,7 @@ info = "Commits must follow Conventional Commits 1.0.0."
[tool.uv]
exclude-newer = "3 days"
# These security fixes are newer than the global supply-chain cutoff.
exclude-newer-package = { pypdf = "2026-06-24T00:00:00Z", msgpack = "2026-06-20T00:00:00Z", pydantic-settings = "2026-06-20T00:00:00Z", langsmith = "2026-06-20T00:00:00Z", gitpython = "2026-07-27T00:00:00Z" }
exclude-newer-package = { pypdf = "2026-08-07T00:00:00Z", msgpack = "2026-06-20T00:00:00Z", pydantic-settings = "2026-06-20T00:00:00Z", langsmith = "2026-06-20T00:00:00Z", gitpython = "2026-08-05T00:00:00Z" }
# composio-core pins rich<14 but textual requires rich>=14.
# onnxruntime 1.24+ dropped Python 3.10 wheels; cap it so qdrant[fastembed] resolves on 3.10.
@@ -186,6 +186,9 @@ exclude-newer-package = { pypdf = "2026-06-24T00:00:00Z", msgpack = "2026-06-20T
# cryptography <50.0.0 has GHSA-g6cj-pr64-35w5 (PKCS#7 Bleichenbacher oracle); force 50.0.0+.
# pypdf <6.10.2 has GHSA-4pxv-j86v-mhcw, GHSA-7gw9-cf7v-778f, GHSA-x284-j5p8-9c5p.
# pypdf <6.14.2 has GHSA-jm82-fx9c-mx94 and GHSA-5qjq-93h5-hrgp/GHSA-55h5-xmcq-c37v/GHSA-g867-7843-wf8q/GHSA-5xf7-4p34-54qr; force 6.14.2+.
# pypdf <6.15.0 has GHSA-fwg2-594c-jp42 and GHSA-fp3f-mc75-235c (unbounded runtime/memory on large content
# and /ToUnicode streams); force 6.15.0+. Its exclude-newer-package cutoff is bumped to 2026-08-07 to admit
# that release.
# uv <0.11.15 has GHSA-4gg8-gxpx-9rph (and earlier GHSA-pjjw-68hj-v9mw); force 0.11.15+.
# python-multipart <0.0.27 has GHSA-pp6c-gr5w-3c5g (DoS via unbounded multipart headers).
# gitpython <3.1.50 has GHSA-mv93-w799-cj2w (config_writer newline injection bypassing the 3.1.49 patch -> RCE via core.hooksPath).
@@ -194,7 +197,11 @@ exclude-newer-package = { pypdf = "2026-06-24T00:00:00Z", msgpack = "2026-06-20T
# gitpython 3.1.52 has GHSA-3rp5-jjmw-4wv2, GHSA-fjr4-x663-mwxc, GHSA-6p8h-3wgx-97gf, and GHSA-r9mr-m37c-5fr3; force 3.1.55+.
# gitpython <3.1.56 has GHSA-p538-c434-8v24 (arbitrary file truncation via `git rev-list --output` argument
# injection) and <3.1.57 has GHSA-3f7w-8rr8-f37f (unguarded git option forwarding in IndexFile.checkout and
# TagReference); force 3.1.57+. Its exclude-newer-package cutoff is bumped to 2026-07-27 to admit that release.
# TagReference); force 3.1.57+.
# gitpython <3.1.58 has GHSA-9rj7-rf2p-w77r, GHSA-4gmw-gg2m-w46p, GHSA-hh9p-6wh2-4mfc, GHSA-wvpp-8hx9-p66j and
# GHSA-jm78-9fvv-mhgr (further unguarded git option forwarding in Repo.init, read-tree and git-config, plus
# arbitrary file read via --pathspec-from-file); force 3.1.58+. Its exclude-newer-package cutoff is bumped to
# 2026-08-05 to admit that release.
# pyasn1 <0.6.4 has GHSA-8ppf-4f7h-5ppj and GHSA-hm4w-wwcw-mr6r; force 0.6.4+.
# urllib3 <2.7.0 has GHSA-qccp-gfcp-xxvc (ProxyManager cross-origin redirect leaks Authorization/Cookie) and GHSA-mf9v-mfxr-j63j (streaming decompression-bomb bypass); force 2.7.0+.
# langsmith <0.8.18 has GHSA-3644-q5cj-c5c7 (public prompt manifest deserialization, SSRF/secret disclosure)
@@ -231,10 +238,10 @@ override-dependencies = [
"urllib3>=2.7.0",
"transformers>=5.4.0; python_version >= '3.10'",
"cryptography>=50.0.0",
"pypdf>=6.14.2,<7",
"pypdf>=6.15.0,<7",
"uv>=0.11.15,<1",
"python-multipart>=0.0.27,<1",
"gitpython>=3.1.57,<4",
"gitpython>=3.1.58,<4",
"pyasn1>=0.6.4",
"langsmith>=0.8.18,<1",
"authlib>=1.6.12",

114
uv.lock generated
View File

@@ -19,8 +19,8 @@ exclude-newer-span = "P3D"
[options.exclude-newer-package]
msgpack = "2026-06-20T00:00:00Z"
langsmith = "2026-06-20T00:00:00Z"
gitpython = "2026-07-27T00:00:00Z"
pypdf = "2026-06-24T00:00:00Z"
gitpython = "2026-08-05T00:00:00Z"
pypdf = "2026-08-07T00:00:00Z"
pydantic-settings = "2026-06-20T00:00:00Z"
[manifest]
@@ -37,7 +37,7 @@ overrides = [
{ name = "authlib", specifier = ">=1.6.12" },
{ name = "cryptography", specifier = ">=50.0.0" },
{ name = "docling-core", extras = ["chunking"], specifier = ">=2.74.1" },
{ name = "gitpython", specifier = ">=3.1.57,<4" },
{ name = "gitpython", specifier = ">=3.1.58,<4" },
{ name = "h2", specifier = ">=4.4.1" },
{ name = "langchain-core", specifier = ">=1.3.3,<2" },
{ name = "langchain-text-splitters", specifier = ">=1.1.2,<2" },
@@ -51,7 +51,7 @@ overrides = [
{ name = "pip", specifier = ">=26.1.2" },
{ name = "pyasn1", specifier = ">=0.6.4" },
{ name = "pydantic-settings", specifier = ">=2.14.2" },
{ name = "pypdf", specifier = ">=6.14.2,<7" },
{ name = "pypdf", specifier = ">=6.15.0,<7" },
{ name = "python-multipart", specifier = ">=0.0.27,<1" },
{ name = "rich", specifier = ">=13.7.1" },
{ name = "setuptools", specifier = ">=83.0.0" },
@@ -1057,7 +1057,7 @@ name = "coloredlogs"
version = "15.0.1"
source = { registry = "https://pypi.org/simple" }
dependencies = [
{ name = "humanfriendly" },
{ name = "humanfriendly", marker = "python_full_version < '3.11'" },
]
sdist = { url = "https://files.pythonhosted.org/packages/cc/c7/eed8f27100517e8c0e6b923d5f0845d0cb99763da6fdee00478f91db7325/coloredlogs-15.0.1.tar.gz", hash = "sha256:7c991aa71a4577af2f82600d8f8f3a89f936baeaf9b50a9c197da014e5bf16b0", size = 278520, upload-time = "2021-06-11T10:22:45.202Z" }
wheels = [
@@ -1155,7 +1155,7 @@ resolution-markers = [
"python_full_version < '3.11' and platform_machine == 's390x'",
]
dependencies = [
{ name = "numpy", version = "2.2.6", source = { registry = "https://pypi.org/simple" } },
{ name = "numpy", version = "2.2.6", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version < '3.11'" },
]
sdist = { url = "https://files.pythonhosted.org/packages/66/54/eb9bfc647b19f2009dd5c7f5ec51c4e6ca831725f1aea7a993034f483147/contourpy-1.3.2.tar.gz", hash = "sha256:b6945942715a034c671b7fc54f9588126b0b8bf23db2696e3ca8328f3ff0ab54", size = 13466130, upload-time = "2025-04-15T17:47:53.79Z" }
wheels = [
@@ -1230,7 +1230,7 @@ resolution-markers = [
"python_full_version == '3.11.*' and platform_machine == 's390x'",
]
dependencies = [
{ name = "numpy", version = "2.4.6", source = { registry = "https://pypi.org/simple" } },
{ name = "numpy", version = "2.4.6", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version >= '3.11'" },
]
sdist = { url = "https://files.pythonhosted.org/packages/58/01/1253e6698a07380cd31a736d248a3f2a50a7c88779a1813da27503cadc2a/contourpy-1.3.3.tar.gz", hash = "sha256:083e12155b210502d0bca491432bb04d56dc3432f95a979b429f2848c3dbe880", size = 13466174, upload-time = "2025-07-26T12:03:12.549Z" }
wheels = [
@@ -1884,34 +1884,34 @@ wheels = [
[package.optional-dependencies]
cudart = [
{ name = "nvidia-cuda-runtime" },
{ name = "nvidia-cuda-runtime", marker = "sys_platform == 'linux' or sys_platform == 'win32'" },
]
cufft = [
{ name = "nvidia-cufft" },
{ name = "nvidia-cufft", marker = "sys_platform == 'linux' or sys_platform == 'win32'" },
]
cufile = [
{ name = "nvidia-cufile" },
{ name = "nvidia-cufile", marker = "sys_platform == 'linux'" },
]
cupti = [
{ name = "nvidia-cuda-cupti" },
{ name = "nvidia-cuda-cupti", marker = "sys_platform == 'linux' or sys_platform == 'win32'" },
]
curand = [
{ name = "nvidia-curand" },
{ name = "nvidia-curand", marker = "sys_platform == 'linux' or sys_platform == 'win32'" },
]
cusolver = [
{ name = "nvidia-cusolver" },
{ name = "nvidia-cusolver", marker = "sys_platform == 'linux' or sys_platform == 'win32'" },
]
cusparse = [
{ name = "nvidia-cusparse" },
{ name = "nvidia-cusparse", marker = "sys_platform == 'linux' or sys_platform == 'win32'" },
]
nvjitlink = [
{ name = "nvidia-nvjitlink" },
{ name = "nvidia-nvjitlink", marker = "sys_platform == 'linux' or sys_platform == 'win32'" },
]
nvrtc = [
{ name = "nvidia-cuda-nvrtc" },
{ name = "nvidia-cuda-nvrtc", marker = "sys_platform == 'linux' or sys_platform == 'win32'" },
]
nvtx = [
{ name = "nvidia-nvtx" },
{ name = "nvidia-nvtx", marker = "sys_platform == 'linux' or sys_platform == 'win32'" },
]
[[package]]
@@ -2436,7 +2436,7 @@ name = "exceptiongroup"
version = "1.3.1"
source = { registry = "https://pypi.org/simple" }
dependencies = [
{ name = "typing-extensions" },
{ name = "typing-extensions", marker = "python_full_version < '3.11'" },
]
sdist = { url = "https://files.pythonhosted.org/packages/50/79/66800aadf48771f6b62f7eb014e352e5d06856655206165d775e675a02c9/exceptiongroup-1.3.1.tar.gz", hash = "sha256:8b412432c6055b0b7d14c310000ae93352ed6754f70fa8f7c34141f91c4e3219", size = 30371, upload-time = "2025-11-21T23:01:54.787Z" }
wheels = [
@@ -2772,14 +2772,14 @@ wheels = [
[[package]]
name = "gitpython"
version = "3.1.57"
version = "3.1.58"
source = { registry = "https://pypi.org/simple" }
dependencies = [
{ name = "gitdb" },
]
sdist = { url = "https://files.pythonhosted.org/packages/ba/0d/132ed135c871b6bf91adf16a0e43797cd535b81d4973b5d09291c54fc5ee/gitpython-3.1.57.tar.gz", hash = "sha256:c493ec57c0ef6b19743798b6a5af859c71814b524e7e6f97baa2f8e658961488", size = 225898, upload-time = "2026-07-26T07:33:26.351Z" }
sdist = { url = "https://files.pythonhosted.org/packages/26/d6/5f358ff283325580c2003a6d953aea18cfe10ae87b46f5ebc80fa3a386dc/gitpython-3.1.58.tar.gz", hash = "sha256:621416df10ef3fd0e19fabf9172ddeed0fa704d353d04f194eec56a625a95b22", size = 228498, upload-time = "2026-08-04T15:05:49.47Z" }
wheels = [
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[[package]]
@@ -3025,8 +3025,8 @@ name = "grpcio-health-checking"
version = "1.71.2"
source = { registry = "https://pypi.org/simple" }
dependencies = [
{ name = "grpcio" },
{ name = "protobuf" },
{ name = "grpcio", marker = "python_full_version < '3.11' or (python_full_version >= '3.13' and platform_machine != 's390x')" },
{ name = "protobuf", marker = "python_full_version < '3.11' or (python_full_version >= '3.13' and platform_machine != 's390x')" },
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sdist = { url = "https://files.pythonhosted.org/packages/53/86/20994347ef36b7626fb74539f13128100dd8b7eaac67efc063264e6cdc80/grpcio_health_checking-1.71.2.tar.gz", hash = "sha256:1c21ece88c641932f432b573ef504b20603bdf030ad4e1ec35dd7fdb4ea02637", size = 16770, upload-time = "2025-06-28T04:24:08.768Z" }
wheels = [
@@ -3230,7 +3230,7 @@ name = "humanfriendly"
version = "10.0"
source = { registry = "https://pypi.org/simple" }
dependencies = [
{ name = "pyreadline3", marker = "sys_platform == 'win32'" },
{ name = "pyreadline3", marker = "python_full_version < '3.11' and sys_platform == 'win32'" },
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@@ -4467,10 +4467,10 @@ resolution-markers = [
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{ name = "mcp", extra = ["ws"] },
{ name = "pydantic" },
{ name = "python-dotenv" },
{ name = "jsonref", marker = "python_full_version < '3.12'" },
{ name = "mcp", extra = ["ws"], marker = "python_full_version < '3.12'" },
{ name = "pydantic", marker = "python_full_version < '3.12'" },
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@@ -4488,10 +4488,10 @@ resolution-markers = [
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{ name = "mcp", extra = ["ws"] },
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{ name = "python-dotenv" },
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{ name = "mcp", extra = ["ws"], marker = "python_full_version >= '3.12'" },
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@@ -5507,12 +5507,12 @@ name = "onnxruntime"
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dependencies = [
{ name = "coloredlogs" },
{ name = "flatbuffers" },
{ name = "numpy", version = "2.2.6", source = { registry = "https://pypi.org/simple" } },
{ name = "packaging" },
{ name = "protobuf" },
{ name = "sympy" },
{ name = "coloredlogs", marker = "python_full_version < '3.11'" },
{ name = "flatbuffers", marker = "python_full_version < '3.11'" },
{ name = "numpy", version = "2.2.6", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version < '3.11'" },
{ name = "packaging", marker = "python_full_version < '3.11'" },
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{ name = "sympy", marker = "python_full_version < '3.11'" },
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@@ -7187,14 +7187,14 @@ wheels = [
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@@ -8160,7 +8160,7 @@ resolution-markers = [
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